calcVariantGraph edit page

set up variant graph for parent grain reconstruction

Description

The weights of the graph are computed from a cummulative Gaussian distribution with mean given by the option 'threshold' and variance given by the option 'tolerance'. The options 'C2C' and 'P2C' may be used to restrict the graph to specific neighborhood relationships. The option mergeSimilar creates a variant graph that does not distinguish between similar variants.

Syntax

job.calcVariantGraph

Input

job parentGrainReconstructor

Output

job.graph adjacency matrix of the graph

Options

threshold misfit at which the probability is set to 0.5, default is 2 degree
tolerance range around the threshold where the probability increases from 0 to 1
C2C consider only child to child grain boundaries
P2C consider only parent to child grain boundaries
mergeSimilar merge similar variants in the graph

References