set up variant graph for parent grain reconstruction
Description
The weights of the graph are computed from a cumulative Gaussian distribution with mean given by the option 'threshold' and variance given by the option 'tolerance'. The options 'C2C' and 'P2C' may be used to restrict the graph to specific neighborhood relationships. The option mergeSimilar creates a variant graph that does not distinguish between similar variants.
Syntax
job.calcVariantGraphInput
| job | parentGrainReconstructor |
Output
| job.graph | adjacency matrix of the graph |
Options
| threshold | misfit at which the probability is set to 0.5, default is 2 degree |
| tolerance | range around the threshold where the probability increases from 0 to 1 |
| C2C | consider only child to child grain boundaries |
| P2C | consider only parent to child grain boundaries |
| mergeSimilar | merge similar variants in the graph |